MetaCyc Pathway: TCA cycle VIII (Chlamydia) in Pseudomonas stutzeri RCH2

Add experiment(s):


Reactions and Genes Phosphomycin 0.012 mg/ml
remove
2-oxoglutarate + coenzyme A + NAD+→succinyl-CoA + CO2 + NADH (EC 1.2.1.105)
Psest_2218 +0.1
Succinate--CoA ligase (ADP-forming) (in reverse):
succinyl-CoA + ADP + phosphate→succinate + ATP + coenzyme A
(EC 6.2.1.5)
Psest_2490 +0.4
Psest_2491 +0.3
Succinate dehydrogenase (ubiquinone):
succinate[in] + an electron-transfer quinone→fumarate[in] + an electron-transfer quinol
(EC 1.3.5.1)
Psest_2495 N.D.
Psest_2496 N.D.
Psest_2497 N.D.
Psest_2498 N.D.
Fumarate hydratase (in reverse):
fumarate + H2O→(S)-malate
(EC 4.2.1.2)
Psest_2682 -0.2
Psest_3193 N.D.
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+
(EC 1.1.1.37; 1.1.1.38)
No genes
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→2-oxoglutarate + L-aspartate
(EC 2.6.1.1)
Psest_1268 -0.0
Psest_1570 +0.1
Psest_1710 +1.3
Psest_1990 -0.3
Psest_0779 -0.3

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information