MetaCyc Pathway: pyrimidine deoxyribonucleosides degradation in Pantoea sp. MT58

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Reactions and Genes Ying_Nucleobase14 rep B; time point 2
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Cytidine deaminase:
2'-deoxycytidine + H+ + H2O→2'-deoxyuridine + ammonium (EC 3.5.4.5)
IAI47_06760 +0.4
Pyrimidine-nucleoside phosphorylase:
thymidine + phosphate→2-deoxy-α-D-ribose 1-phosphate + thymine (EC 2.4.2.2; 2.4.2.4)
IAI47_03405 +0.3
IAI47_14920 +0.2
Pyrimidine-nucleoside phosphorylase:
2'-deoxyuridine + phosphate→2-deoxy-α-D-ribose 1-phosphate + uracil (EC 2.4.2.2; 2.4.2.3)
IAI47_03405 +0.3
IAI47_03415 -3.3
IAI47_18300 -2.4

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information