MetaCyc Pathway: S-methyl-5-thio-α-D-ribose 1-phosphate degradation II in Phocaeicola vulgatus CL09T03C04

Reactions and Genes	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
S-methyl-5-thioribose-1-phosphate isomerase: S-methyl-5-thio-α-D-ribose 1-phosphate→S-methyl-5-thio-D-ribulose 1-phosphate (EC 5.3.1.23)
No genes
S-methyl-5-thio-D-ribulose 1-phosphate→S-methyl-1-thio-D-xylulose 5-phosphate (EC 5.3.3.23)
No genes
S-methyl-1-thio-D-xylulose 5-phosphate + glutathione→S-(methylsulfanyl)glutathione + 1-deoxy-D-xylulose 5-phosphate (EC 2.8.4.6)
No genes
S-(methylsulfanyl)glutathione + glutathione→methanethiol + glutathione disulfide
No genes
O-acetylhomoserine aminocarboxypropyltransferase: methanethiol + O-acetyl-L-homoserine→L-methionine + acetate + H+ (EC 2.5.1.49)
HMPREF1058_RS09160	+1.6
HMPREF1058_RS17635	-3.0

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information