| Reactions and Genes | RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x |
|---|
| remove |
Aspartate kinase:
L-aspartate + ATP→L-aspartyl-4-phosphate + ADP (EC 2.7.2.4) |
| BWI76_RS00790 | +0.3 |
| BWI76_RS01790 | -1.6 |
| BWI76_RS04245 | -2.6 |
Aspartate-semialdehyde dehydrogenase (in reverse):
L-aspartyl-4-phosphate + NADPH + H+→L-aspartate 4-semialdehyde + NADP+ + phosphate (EC 1.2.1.11) |
| BWI76_RS12880 | -0.2 |
| BWI76_RS20385 | +1.0 |
| BWI76_RS26220 | N.D. |
| L-aspartate 4-semialdehyde + pyruvate→(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H+ + H2O (EC 4.3.3.7) |
| BWI76_RS00585 | -0.1 |
| BWI76_RS05685 | +0.3 |
| BWI76_RS10255 | +0.3 |
| BWI76_RS15245 | +0.0 |
| BWI76_RS18305 | +0.5 |
| BWI76_RS20905 | N.D. |
| BWI76_RS26315 | -0.1 |
| (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+→(S)-2,3,4,5-tetrahydrodipicolinate + NAD(P)+ + H2O (EC 1.17.1.8) |
| BWI76_RS04460 | N.D. |
| (S)-2,3,4,5-tetrahydrodipicolinate + H+ + H2O→L-α-amino-ε-keto-pimelate (spontaneous) |
| No genes |
Diaminopimelate dehydrogenase (in reverse):
L-α-amino-ε-keto-pimelate + ammonium + NADPH + H+→meso-diaminopimelate + NADP+ + H2O (EC 1.4.1.16) |
| No genes |
Diaminopimelate decarboxylase:
meso-diaminopimelate + H+→L-lysine + CO2 (EC 4.1.1.20) |
| BWI76_RS23360 | -3.8 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information