| Reactions and Genes | RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x |
|---|
| remove |
Aspartate kinase:
L-aspartate + ATP→L-aspartyl-4-phosphate + ADP (EC 2.7.2.4) |
| BWI76_RS00790 | -0.1 |
| BWI76_RS01790 | -1.2 |
| BWI76_RS04245 | -1.4 |
Aspartate-semialdehyde dehydrogenase (in reverse):
L-aspartyl-4-phosphate + NADPH + H+→L-aspartate 4-semialdehyde + NADP+ + phosphate (EC 1.2.1.11) |
| BWI76_RS12880 | +0.2 |
| BWI76_RS20385 | +0.8 |
| BWI76_RS26220 | N.D. |
| L-aspartate 4-semialdehyde + pyruvate→(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H+ + H2O (EC 4.3.3.7) |
| BWI76_RS00585 | +0.0 |
| BWI76_RS05685 | -0.4 |
| BWI76_RS10255 | +1.1 |
| BWI76_RS15245 | -0.2 |
| BWI76_RS18305 | +1.6 |
| BWI76_RS20905 | N.D. |
| BWI76_RS26315 | +0.1 |
| (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+→(S)-2,3,4,5-tetrahydrodipicolinate + NAD(P)+ + H2O (EC 1.17.1.8) |
| BWI76_RS04460 | N.D. |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase:
(S)-2,3,4,5-tetrahydrodipicolinate + succinyl-CoA + H2O→N-succinyl-2-amino-6-ketopimelate + coenzyme A (EC 2.3.1.117) |
| BWI76_RS05195 | N.D. |
Succinyldiaminopimelate transaminase (in reverse):
N-succinyl-2-amino-6-ketopimelate + L-glutamate→N-succinyl-L,L-2,6-diaminopimelate + 2-oxoglutarate (EC 2.6.1.17) |
| BWI76_RS09755 | -4.0 |
| BWI76_RS26000 | -0.8 |
Succinyl-diaminopimelate desuccinylase:
N-succinyl-L,L-2,6-diaminopimelate + H2O→L,L-diaminopimelate + succinate (EC 3.5.1.18) |
| BWI76_RS10270 | -0.1 |
| BWI76_RS13530 | +0.5 |
| BWI76_RS14620 | -0.4 |
| BWI76_RS20870 | N.D. |
Diaminopimelate epimerase:
L,L-diaminopimelate→meso-diaminopimelate (EC 5.1.1.7) |
| BWI76_RS01200 | +0.8 |
| BWI76_RS18105 | N.D. |
Diaminopimelate decarboxylase:
meso-diaminopimelate + H+→L-lysine + CO2 (EC 4.1.1.20) |
| BWI76_RS23360 | -4.2 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information