Fitness data for PFLU_RS28405 in Pseudomonas fluorescens SBW25-INTG

radical SAM family heme chaperone HemW
SEED: Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB
KEGG: oxygen-independent coproporphyrinogen III oxidase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
temperature shift Temperature shift 30_to_34 -0.7 -5.9 compare
temperature shift Temperature shift 30_to_34 -0.7 -5.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -3.2 compare
stress Betaine (C)(N); with MOPS; with chloride -0.6 -3.6 compare
pH Growth at pH8 and (C) Trisodium citrate -0.6 -3.1 compare
temperature shift Temperature shift 30_to_34 -0.6 -4.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 -3.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -4.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -3.2 compare
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.5 +4.0 compare
carbon source L-Valine (C) +0.5 +3.1 compare
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.5 +4.1 compare
carbon source L-Valine 10 mM (C) +0.5 +3.3 compare
carbon source L-Carnitine (C) +0.6 +3.5 compare
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.6 +3.9 compare
carbon source L-Valine 10 mM (C) +0.6 +4.3 compare
carbon source p-Coumaric (C) +0.6 +5.4 compare
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.7 +4.5 compare
carbon source L-Valine 10 mM (C) +0.7 +4.8 compare
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.9 +6.2 compare