Fitness data for PFLU_RS00840 in Pseudomonas fluorescens SBW25-INTG

RNA polymerase sigma factor
SEED: RNA polymerase sigma-E factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
carbon source 4-Guanidinobutyric (C) -1.9 -4.1 compare
carbon source Choline chloride 10 mM (C) -1.5 -3.1 compare
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -1.2 -3.5 compare
carbon source propionate 20 mM (C) -1.2 -3.5 compare
carbon source Phloretic Acid 2 mM (C) -1.1 -2.7 compare
carbon source 4-hydroxyphenylacetic 2 mM (C) -1.1 -2.9 compare
carbon source D,L-Malic Acid (C) -1.0 -2.4 compare
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -1.9 compare
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.0 -2.6 compare
no stress control Glucose (C) and nitrate (N); with TAPS -0.9 -2.8 compare
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9 -2.2 compare
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.9 -2.7 compare
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.9 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -2.3 compare
no stress control Glycine betaine (C)(N); with TAPS +0.8 +3.1 compare
carbon source Quinic Acid (C) +0.8 +2.3 compare
carbon source Xanthosine (C) +0.8 +2.2 compare
carbon source Inosine (C) +1.0 +2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +1.2 +2.9 compare