Fitness data for HSERO_RS24005 in Herbaspirillum seropedicae SmR1

methylmalonate-semialdehyde dehydrogenase
SEED: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
KEGG: methylmalonate-semialdehyde dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source m-Inositol (C) -1.3 -4.0 compare
carbon source m-Inositol (C) -1.1 -3.2 compare
carbon source a-Ketoglutaric (C) -0.5 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.4 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -2.0 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.3 -2.0 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.3 -1.7 compare
carbon source a-Ketoglutaric (C) -0.3 -1.5 compare
carbon source D-Ribose (C) -0.3 -2.0 compare
vitamin No vitamins t2 -0.3 -1.9 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.3 -1.3 compare
stress A22 0.02 mg/ml +0.3 +1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.3 compare