Fitness data for HSERO_RS23400 in Herbaspirillum seropedicae SmR1

DNA processing protein DprA
SEED: Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
KEGG: DNA processing protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source L-Fucose (C) -0.6 -2.8 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -0.6 -3.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.6 -2.9 compare
carbon source L-Asparagine (C) -0.5 -3.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.9 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.3 compare
carbon source L-Asparagine (C) -0.4 -2.0 compare
carbon source D-Gluconic Acid (C) -0.4 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.9 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.3 -2.0 compare
carbon source D-Galactose (C) -0.3 -1.8 compare
carbon source Carbon source Phenylacetic 5 mM -0.3 -2.1 compare
carbon source D-Sorbitol (C) -0.3 -1.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 -1.3 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.3 -1.7 compare
carbon source D,L-Lactate (C) +0.3 +2.1 compare
stress nitrate 200 mM +0.3 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.4 compare