Fitness data for HSERO_RS23040 in Herbaspirillum seropedicae SmR1

D-galacturonate dehydrogenase (EC 1.1.1.203) (from data)
Original annotation: NAD-dependent dehydratase
SEED: UDP-glucose 4-epimerase (EC 5.1.3.2)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source D-Galacturonic Acid (C) -3.1 -5.6 compare
carbon source D-Galacturonic Acid (C) -1.9 -3.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.3 -3.4 compare
plant Control soil assay; outgrowth in LB -0.8 -2.0 compare
stress sodium fluoride 100 mM -0.6 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.2 compare
carbon source D-Gluconic Acid (C) -0.6 -1.6 compare
carbon source D-Gluconic Acid (C) -0.6 -2.0 compare
stress Cobalt chloride 0.2 mM -0.6 -1.8 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.5 -1.9 compare
carbon source D,L-Lactate (C) -0.5 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.8 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.5 -2.0 compare
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +0.5 +1.9 compare
carbon source D-Galactose (C) +0.5 +1.6 compare
carbon source L-Glutamine (C) +0.5 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.3 compare
control NoPredeControl +0.6 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +1.4 compare