Fitness data for HSERO_RS22385 in Herbaspirillum seropedicae SmR1

GMC family oxidoreductase
SEED: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein
KEGG: gluconate 2-dehydrogenase alpha chain

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -2.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4 -2.3 compare
micoeukaryotes C.elegans, mixed culture-2 -0.4 -2.1 compare
carbon source Xylitol (C) -0.4 -2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.3 compare
nitrogen source Ammonium chloride (N); low aeration -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.4 -2.2 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.4 -1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.3 -1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.3 compare
carbon source L-Malic (C) +0.4 +3.0 compare
stress Lomefloxacin 0.012 mM +0.4 +2.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.5 compare
stress Sisomicin 0.125 mg/ml +0.5 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +1.4 compare