Fitness data for HSERO_RS22240 in Herbaspirillum seropedicae SmR1

L-rhamnose isomerase (EC 5.3.1.14) (from data)
Original annotation: sugar isomerase
SEED: L-rhamnose isomerase (EC 5.3.1.14)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


Add gene:

Or see all 244 experiments or choose conditions

group condition fitness t score  
carbon source L-Rhamnose (C) -5.1 -10.4 compare
carbon source L-Rhamnose (C) -4.2 -6.1 compare
carbon source L-Rhamnose (C) -3.5 -8.6 compare
carbon source L-Rhamnose (C) -3.4 -8.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -1.9 compare
carbon source L-Arabinose (C) -0.4 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.0 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.4 +1.9 compare
carbon source L-mannose (C) +0.4 +1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +2.4 compare
carbon source L-Fucose (C) +0.4 +1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.6 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.5 +1.5 compare
carbon source D-Galacturonic Acid (C) +0.5 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.5 +3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.8 compare