Fitness data for HSERO_RS22230 in Herbaspirillum seropedicae SmR1

DeoR faimly transcriptional regulator
SEED: Transcriptional regulator of rhamnose utilization, DeoR family
KEGG: DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source L-Rhamnose (C) -6.6 -7.8 compare
carbon source L-Rhamnose (C) -5.3 -6.4 compare
carbon source L-Rhamnose (C) -4.3 -4.5 compare
carbon source L-Rhamnose (C) -3.8 -5.8 compare
carbon source L-Arabinose (C) -1.2 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.7 -1.8 compare
stress Lomefloxacin 0.012 mM -0.6 -2.0 compare
carbon source Glycerol (C) -0.5 -1.5 compare
micoeukaryotes C.elegans, mixed culture-2 -0.5 -1.4 compare
nutrient Min media with glucose +0.5 +2.4 compare
vitamin No vitamins t2 +0.5 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.5 compare
vitamin With vitamins t2 +0.5 +1.7 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.4 compare
vitamin With vitamins t1 +0.6 +2.1 compare
vitamin No vitamins t1 +0.6 +2.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.3 +2.2 compare