Fitness data for HSERO_RS22215 in Herbaspirillum seropedicae SmR1

branched-chain amino acid ABC transporter permease
SEED: Predicted L-rhamnose ABC transporter, transmembrane component 2
KEGG: rhamnose transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
carbon source L-Rhamnose (C) -4.4 -7.2 compare
carbon source L-Rhamnose (C) -4.0 -7.1 compare
carbon source L-Rhamnose (C) -2.6 -4.3 compare
carbon source L-Rhamnose (C) -1.6 -2.4 compare
carbon source D-Sorbitol (C) -1.5 -3.2 compare
stress Lomefloxacin 0.012 mM -1.3 -2.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -1.1 -1.8 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -1.1 -2.0 compare
supernatant control Vogels_fungal_media; pH 5.5 -1.1 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -2.2 compare
carbon source D-Galacturonic Acid (C) -0.8 -1.9 compare
control NoPredeControl -0.7 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +1.2 compare
carbon source D-Mannose (C) +0.7 +2.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +3.1 compare
vitamin With vitamins t2 +0.8 +1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.8 +2.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.9 +2.1 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +1.0 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.9 +1.7 compare