Fitness data for HSERO_RS22200 in Herbaspirillum seropedicae SmR1

Rhamnulokinase (EC 2.7.1.5) (from data)
Original annotation: L-fuculose kinase
SEED: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source L-Rhamnose (C) -6.3 -7.5 compare
carbon source L-Rhamnose (C) -5.2 -7.5 compare
carbon source L-Rhamnose (C) -3.0 -7.6 compare
carbon source L-Rhamnose (C) -3.0 -6.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -1.4 compare
control NoPredeControl -0.4 -1.1 compare
stress sodium fluoride 100 mM -0.4 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.2 compare
carbon source L-Fucose (C) +0.4 +1.5 compare
vitamin With vitamins t2 +0.4 +1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.4 +2.2 compare
carbon source L-Fucose (C) +0.4 +1.5 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.5 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.5 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.5 +1.6 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.5 +2.5 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.6 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +1.8 compare