Fitness data for HSERO_RS21235 in Herbaspirillum seropedicae SmR1

amino acid ABC transporter substrate-binding protein
SEED: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
KEGG: polar amino acid transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
stress Lomefloxacin 0.012 mM -0.7 -2.6 compare
carbon source D-Ribose (C) -0.6 -1.5 compare
carbon source L-Rhamnose (C) -0.5 -2.9 compare
carbon source succinate (C) -0.5 -2.6 compare
carbon source L-Lactate (C) -0.4 -2.2 compare
carbon source D-Gluconic Acid (C) -0.4 -1.6 compare
carbon source Glycerol (C) -0.4 -1.6 compare
carbon source Xylitol (C) -0.4 -1.6 compare
carbon source succinate (C) -0.4 -1.3 compare
carbon source D,L-Lactate (C) -0.4 -1.4 compare
stress sodium fluoride 100 mM +0.4 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +0.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.6 compare
plant Control soil assay; outgrowth in LB +0.4 +1.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.7 +4.0 compare