Fitness data for HSERO_RS20660 in Herbaspirillum seropedicae SmR1

bifunctional thiolase PaaJ: 3-oxo-5,6-dehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data)
Original annotation: acetyl-CoA acetyltransferase
SEED: Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source Carbon source Phenylacetic 5 mM -4.9 -14.5 compare
carbon source Carbon source Phenylacetic 5 mM -4.7 -14.0 compare
carbon source D-Galactose (C) -0.5 -2.1 compare
carbon source Xylitol (C) -0.4 -2.8 compare
carbon source Xylitol (C) -0.4 -1.8 compare
carbon source L-Lactate (C) -0.4 -1.9 compare
carbon source L-Fucose (C) -0.4 -1.5 compare
carbon source D-Galacturonic Acid (C) -0.4 -1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.3 +1.3 compare
r2a control R2A control +0.3 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +2.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.5 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.0 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.5 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.4 compare