Fitness data for HSERO_RS20650 in Herbaspirillum seropedicae SmR1

phenylacetic acid degradation protein
SEED: Phenylacetic acid degradation protein PaaD, thioesterase
KEGG: phenylacetic acid degradation protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source Carbon source Phenylacetic 5 mM -2.5 -7.0 compare
carbon source Carbon source Phenylacetic 5 mM -1.9 -5.1 compare
carbon source D-Glucose-6-Phosphate (C) -0.7 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -2.6 compare
carbon source D-Mannose (C) -0.5 -1.8 compare
carbon source D-Glucose (C) +0.5 +2.0 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.5 +2.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +1.2 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.5 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.7 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.6 +1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 +1.6 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +2.1 compare
carbon source D-Xylose (C) +0.6 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 +2.0 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.9 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.0 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.3 +1.8 compare