Fitness data for HSERO_RS20645 in Herbaspirillum seropedicae SmR1

3-hydroxyacyl-CoA dehydrogenase
SEED: 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-)
KEGG: 3-hydroxybutyryl-CoA dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source Carbon source Phenylacetic 5 mM -4.7 -7.8 compare
carbon source Carbon source Phenylacetic 5 mM -4.0 -6.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -1.7 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.5 -2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.8 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -0.4 -2.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -1.4 compare
stress Fusidic 0.025 mg/ml -0.4 -1.5 compare
carbon source L-Asparagine (C) -0.4 -1.9 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.4 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +2.3 compare
carbon source D-Xylose (C) +0.5 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.7 +1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 +1.8 compare