Fitness data for HSERO_RS20630 in Herbaspirillum seropedicae SmR1

phenylacetic acid degradation protein
SEED: Phenylacetate-CoA oxygenase/reductase, PaaK subunit
KEGG: phenylacetic acid degradation NADH oxidoreductase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.5)


Add gene:

Or see all 244 experiments or choose conditions

group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -4.8 -2.8 compare
carbon source Carbon source Phenylacetic 5 mM -4.0 -2.7 compare
carbon source Carbon source Phenylacetic 5 mM -3.9 -2.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.4 -3.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -3.4 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -3.3 -2.3 compare
control NoPredeControl -3.2 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.7 -1.8 compare
carbon source m-Inositol (C) -2.4 -3.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.2 -1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -2.2 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.1 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.9 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.7 -1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.6 -1.6 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +1.5 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.6 +1.3 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +1.8 +1.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.9 +1.2 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +2.0 +1.8 compare