Fitness data for HSERO_RS20590 in Herbaspirillum seropedicae SmR1

fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91) (from data)
Original annotation: enoyl-CoA hydratase
SEED: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
KEGG: phenylacetic acid degradation protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source Carbon source Phenylacetic 5 mM -4.2 -12.7 compare
carbon source Carbon source Phenylacetic 5 mM -4.1 -13.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -2.4 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.4 -1.8 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -0.4 -2.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.1 compare
carbon source L-Arabinose (C) +0.4 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +2.8 compare
carbon source m-Inositol (C) +0.4 +2.5 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.6 compare
stress sodium fluoride 100 mM +0.5 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.8 compare
control NoPredeControl +0.5 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +3.3 compare