Fitness data for HSERO_RS20110 in Herbaspirillum seropedicae SmR1

ABC transporter substrate-binding protein
SEED: ABC transporter, substrate binding protein
KEGG: simple sugar transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -2.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.8 compare
carbon source D-Lactate (C) -0.4 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.5 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.7 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days +0.4 +1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.3 compare
stress Cisplatin 0.003 mg/ml +0.4 +2.3 compare
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +0.4 +2.4 compare
stress Lomefloxacin 0.012 mM +0.5 +1.2 compare
vitamin No vitamins t1 +0.6 +3.2 compare
carbon source pyruvate (C) +0.6 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +1.0 compare
stress nitrate 200 mM +0.8 +2.8 compare