Fitness data for HSERO_RS20045 in Herbaspirillum seropedicae SmR1

branched-chain amino acid ABC transporter substrate-binding protein
SEED: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
KEGG: branched-chain amino acid transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -3.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.4 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.8 compare
carbon source pyruvate (C) -0.4 -2.0 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -0.3 -2.1 compare
carbon source pyruvate (C) -0.3 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +1.6 compare
r2a control R2A control +0.3 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.4 +2.1 compare
stress Sisomicin 0.125 mg/ml +0.4 +1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 +2.0 compare
carbon source Glycerol (C) +0.4 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +2.2 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.5 +1.8 compare
stress Lomefloxacin 0.012 mM +0.5 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +2.5 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.7 +1.8 compare