Fitness data for HSERO_RS19980 in Herbaspirillum seropedicae SmR1

ABC transporter permease
SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.8 -2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 -2.4 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.7 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 -2.7 compare
stress Cisplatin 0.003 mg/ml -0.7 -2.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.6 -2.0 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -0.6 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -1.7 compare
nitrogen source nitrate (N); low aeration +0.6 +2.7 compare
plant Control soil assay; outgrowth in LB +0.6 +1.4 compare
carbon source L-Arabinose (C) +0.6 +2.4 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.6 +2.1 compare
nitrogen source Ammonium chloride (N); high aeration +0.6 +2.7 compare
carbon source D-Gluconic Acid (C) +0.6 +2.4 compare
nitrogen source Ammonium chloride (N); low aeration +0.6 +3.5 compare
carbon source D-Glucose (C) +0.7 +2.5 compare
carbon source L-Rhamnose (C) +0.7 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +1.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.0 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 +1.5 compare