Fitness data for HSERO_RS19970 in Herbaspirillum seropedicae SmR1

branched-chain amino acid ABC transporter
SEED: Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
control NoPredeControl -1.8 -2.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.1 -2.9 compare
micoeukaryotes C.elegans, mixed culture-1 -1.1 -1.9 compare
stress Chloride stress -0.8 -3.0 compare
nitrogen source nitrate (N); high aeration -0.7 -1.5 compare
carbon source D-Ribose (C) +0.7 +1.2 compare
stress Sisomicin 0.125 mg/ml +0.7 +2.4 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.7 +1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +0.9 compare
carbon source L-Fucose (C) +0.8 +1.8 compare
carbon source D-Galactose (C) +0.8 +1.6 compare
carbon source L-Lactate (C) +0.9 +1.4 compare
carbon source D-Sorbitol (C) +0.9 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.9 +1.6 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +1.0 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 +1.6 compare
carbon source Xylitol (C) +1.1 +2.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.2 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.2 +1.7 compare