Fitness data for HSERO_RS19920 in Herbaspirillum seropedicae SmR1

protocatechuate 3,4-dioxygenase subunit beta
SEED: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
KEGG: protocatechuate 3,4-dioxygenase, beta subunit

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source D-Galactose (C) -0.7 -2.4 compare
carbon source L-Fucose (C) -0.6 -1.4 compare
carbon source succinate (C) -0.6 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.3 compare
micoeukaryotes C.elegans, mixed culture-1 -0.5 -1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.5 -1.6 compare
carbon source L-Arabinose (C) -0.5 -1.5 compare
carbon source D-Gluconic Acid (C) -0.4 -1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -1.8 compare
carbon source D,L-Malic Acid (C) +0.4 +2.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +2.1 compare
nutrient L-Serine +0.4 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.5 +2.7 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.5 +2.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.7 compare
control NoPredeControl +0.6 +2.0 compare
carbon source D-Mannose (C) +0.7 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.1 compare