Fitness data for HSERO_RS18880 in Herbaspirillum seropedicae SmR1

diguanylate cyclase
SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
vitamin No vitamins t2 -0.6 -2.5 compare
plant Control soil assay; outgrowth in LB -0.5 -1.8 compare
control NoPredeControl -0.5 -1.6 compare
vitamin No vitamins t1 -0.5 -1.9 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -0.4 -2.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.4 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -0.4 -2.2 compare
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -0.4 -1.8 compare
plant Control soil assay; outgrowth in LB +0.3 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +1.3 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.5 compare
control NoPredeControl +0.4 +1.6 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.4 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.7 compare
carbon source D-Ribose (C) +0.4 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.2 compare
carbon source succinate (C) +0.4 +1.7 compare
carbon source L-Rhamnose (C) +0.4 +1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 +2.1 compare
stress sodium fluoride 100 mM +0.5 +1.4 compare