Fitness data for HSERO_RS18575 in Herbaspirillum seropedicae SmR1

hydroxyquinol 1,2-dioxygenase
SEED: Catechol 1,2-dioxygenase (EC 1.13.11.1)
KEGG: hydroxyquinol 1,2-dioxygenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source L-Rhamnose (C) -0.6 -2.3 compare
carbon source D-Glucose (C) -0.6 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.5 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -2.0 compare
carbon source D-Mannose (C) -0.5 -2.6 compare
carbon source D-Mannose (C) -0.5 -1.9 compare
stress Fusidic 0.025 mg/ml -0.4 -1.4 compare
carbon source D-Galacturonic Acid (C) -0.4 -1.8 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.4 -2.3 compare
micoeukaryotes C.elegans, mixed culture-2 -0.4 -1.4 compare
carbon source L-Fucose (C) -0.4 -1.1 compare
stress Cobalt chloride 0.2 mM -0.3 -1.1 compare
carbon source Xylitol (C) -0.3 -1.7 compare
vitamin No vitamins t1 +0.3 +1.4 compare
vitamin No vitamins t2 +0.3 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.6 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.4 +1.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 +1.9 compare