Fitness data for HSERO_RS18295 in Herbaspirillum seropedicae SmR1

3'-RNA processing protein
SEED: Catechol 1,2-dioxygenase (EC 1.13.11.1)
KEGG: catechol 1,2-dioxygenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.1 -3.0 compare
carbon source D-Xylose (C) -0.8 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.7 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.7 -2.5 compare
carbon source D-Glucose (C) -0.6 -1.9 compare
carbon source pyruvate (C) -0.5 -1.2 compare
carbon source L-Arabinose (C) -0.5 -1.1 compare
vitamin No vitamins t1 -0.5 -1.1 compare
supernatant control Vogels_fungal_media 0.1X -0.5 -1.3 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.4 -2.0 compare
stress Chloride stress +0.5 +1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.5 +1.0 compare
stress Sisomicin 0.125 mg/ml +0.5 +1.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.5 +2.3 compare
carbon source D,L-Malic Acid (C) +0.5 +2.5 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.5 +1.9 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.6 +3.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.7 +2.0 compare
carbon source D-Galacturonic Acid (C) +0.7 +2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.6 +1.5 compare