Fitness data for HSERO_RS18250 in Herbaspirillum seropedicae SmR1

ABC transporter ATP-binding protein
SEED: Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source D-Galactose (C) -1.2 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -1.3 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.8 -1.8 compare
carbon source L-Lactate (C) -0.7 -1.4 compare
carbon source D-Galactose (C) -0.6 -1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -1.3 compare
carbon source L-Lactate (C) -0.6 -1.4 compare
carbon source D-Ribose (C) -0.6 -1.1 compare
carbon source pyruvate (C) -0.6 -1.3 compare
stress Nickel (II) chloride 0.6 mM +0.6 +1.5 compare
carbon source D-Galactose (C) +0.6 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +1.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 +1.1 compare
carbon source Glycerol (C) +0.6 +1.7 compare
carbon source L-Fucose (C) +0.7 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +1.7 compare
stress Sisomicin 0.125 mg/ml +0.7 +1.5 compare
plant Control soil assay; outgrowth in LB +0.9 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.2 +3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.8 +5.6 compare