Fitness data for HSERO_RS17985 in Herbaspirillum seropedicae SmR1

tRNA pseudouridine synthase B
SEED: tRNA pseudouridine synthase B (EC 4.2.1.70)
KEGG: tRNA pseudouridine synthase B

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 -4.0 compare
micoeukaryotes C.elegans, mixed culture-2 -1.3 -3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.2 -2.3 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -1.2 -2.2 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.2 -3.4 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -1.0 -3.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 -2.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.9 -2.4 compare
carbon source D-Galacturonic Acid (C) -0.9 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 -2.9 compare
carbon source D-Galactose (C) -0.8 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -2.1 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.8 -2.1 compare
stress Thallium(I) acetate 0.001 mg/ml +0.9 +3.8 compare
stress Sisomicin 0.125 mg/ml +1.1 +3.6 compare
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +1.2 +7.2 compare
stress Nickel (II) chloride 0.6 mM +1.2 +4.7 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days +1.3 +6.0 compare
stress Cobalt chloride 0.2 mM +1.4 +5.5 compare