Fitness data for HSERO_RS17780 in Herbaspirillum seropedicae SmR1

50S rRNA methyltransferase
SEED: LSU m3Psi1915 methyltransferase RlmH
KEGG: hypothetical protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.7 -3.1 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.7 -2.8 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.6 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.6 -1.9 compare
plant Control soil assay; outgrowth in LB -0.6 -1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -1.9 compare
carbon source D,L-Lactate (C) -0.6 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.4 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.6 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.5 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.6 -1.9 compare
stress Lomefloxacin 0.012 mM +0.6 +2.0 compare
carbon source D-Lactate (C) +0.6 +1.6 compare
carbon source D,L-Lactate (C) +0.6 +1.6 compare
carbon source L-Fucose (C) +0.7 +2.0 compare
carbon source D-Gluconic Acid (C) +0.7 +2.1 compare
stress Sisomicin 0.125 mg/ml +0.7 +2.0 compare
carbon source Glycerol (C) +0.7 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.5 +1.9 compare