Fitness data for HSERO_RS16995 in Herbaspirillum seropedicae SmR1

sensor histidine kinase
SEED: Signal transduction histidine kinase
KEGG: two-component system, OmpR family, sensor histidine kinase TctE

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
agar plate interaction control Taped volatile agar plate with no fungus -0.7 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.6 -2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.6 -2.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.6 -2.8 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.5 -1.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -2.0 compare
carbon source D-Galactose (C) -0.5 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.6 compare
stress nitrate 200 mM +0.5 +1.2 compare
carbon source L-Malic (C) +0.5 +2.0 compare
vitamin No vitamins t1 +0.5 +2.1 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.6 +2.2 compare
supernatant control Vogels_fungal_media 0.1X +0.6 +2.0 compare
carbon source a-Ketoglutaric (C) +0.6 +2.8 compare
stress Sisomicin 0.125 mg/ml +0.6 +1.9 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.7 +3.1 compare
stress sodium fluoride 100 mM +0.7 +2.0 compare
stress nitrite 20 mM +0.7 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.0 +1.0 compare