Fitness data for HSERO_RS16855 in Herbaspirillum seropedicae SmR1

membrane protein
SEED: Beta-propeller domains of methanol dehydrogenase type

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -2.7 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.6 -1.6 compare
carbon source D-Sorbitol (C) -0.5 -2.2 compare
supernatant control Vogels_fungal_media 0.1X -0.5 -1.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 -0.9 compare
carbon source D-Mannose (C) +0.4 +2.3 compare
carbon source D-Glucose-6-Phosphate (C) +0.4 +1.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.2 compare
carbon source D-Ribose (C) +0.5 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.3 compare
carbon source D-Xylose (C) +0.5 +1.7 compare
carbon source D-Glucose (C) +0.5 +2.2 compare
control NoPredeControl +0.6 +1.5 compare
carbon source L-Lactate (C) +0.6 +1.9 compare
carbon source D-Glucose (C) +0.6 +1.7 compare
carbon source D-Lactate (C) +0.6 +2.5 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.6 +2.2 compare
carbon source D-Galacturonic Acid (C) +0.7 +2.5 compare
carbon source L-Fucose (C) +1.0 +2.8 compare