Fitness data for HSERO_RS16820 in Herbaspirillum seropedicae SmR1

2-oxoglutarate:H+ symporter (from data)
Original annotation: alpha-ketoglutarate permease
SEED: dicarboxylic acid transporter PcaT
KEGG: MFS transporter, MHS family, alpha-ketoglutarate permease

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source a-Ketoglutaric (C) -2.9 -11.9 compare
carbon source a-Ketoglutaric (C) -2.8 -8.9 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.5 -3.7 compare
carbon source L-Arabinose (C) -0.5 -2.3 compare
carbon source D-Glucose-6-Phosphate (C) -0.4 -2.0 compare
carbon source D-Galactose (C) -0.4 -1.5 compare
carbon source D-Glucose (C) -0.4 -1.5 compare
nitrogen source L-Proline (N) -0.4 -2.1 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.4 -2.5 compare
vitamin With vitamins t1 +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.4 compare
vitamin No vitamins t2 +0.4 +1.6 compare
vitamin No vitamins t1 +0.4 +1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.9 compare
carbon source D-Galactose (C) +0.4 +2.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +2.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +1.4 compare