Fitness data for HSERO_RS16815 in Herbaspirillum seropedicae SmR1

C4-dicarboxylate ABC transporter
KEGG: two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source a-Ketoglutaric (C) -2.6 -12.2 compare
carbon source a-Ketoglutaric (C) -2.5 -9.2 compare
plant Control soil assay; outgrowth in LB -0.3 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.8 compare
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +0.3 +2.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.6 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.4 +1.6 compare
carbon source D-Ribose (C) +0.4 +2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +1.6 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.9 +3.4 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +1.0 +3.1 compare