Fitness data for HSERO_RS16690 in Herbaspirillum seropedicae SmR1

C4-dicarboxylate ABC transporter permease
SEED: Tricarboxylate transport membrane protein TctA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -1.5 compare
carbon source D-Mannitol (C) -0.5 -2.3 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.5 -2.0 compare
carbon source D-Glucose (C) -0.5 -1.5 compare
plant Control soil assay; outgrowth in LB -0.4 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.9 compare
nitrogen source Ammonium chloride (N); high aeration -0.4 -1.9 compare
carbon source D-Galactose (C) -0.4 -2.3 compare
carbon source L-Rhamnose (C) -0.4 -1.9 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.4 +1.2 compare
r2a control R2A control +0.4 +2.2 compare
r2a control R2A control +0.4 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +0.4 +2.6 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.4 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.0 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.2 +1.6 compare