Fitness data for HSERO_RS16485 in Herbaspirillum seropedicae SmR1

tRNA pseudouridine synthase A
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: tRNA pseudouridine synthase A

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
carbon source L-mannose (C) -2.1 -5.5 compare
stress Sisomicin 0.125 mg/ml -2.0 -2.5 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -1.9 -6.2 compare
carbon source L-mannose (C) -1.7 -4.8 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -1.7 -4.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.6 -6.9 compare
stress Lomefloxacin 0.012 mM -1.6 -2.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.6 -3.2 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -1.5 -3.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.4 -3.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.4 -4.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.4 -3.7 compare
agar plate interaction control Taped volatile agar plate with no fungus -1.4 -2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.3 -3.4 compare
carbon source L-Malic (C) -1.3 -5.0 compare
r2a control R2A control -1.3 -6.1 compare
carbon source D-Mannose (C) -1.3 -4.3 compare
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days +1.3 +4.9 compare
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +1.6 +9.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.1 +2.3 compare