Fitness data for HSERO_RS15940 in Herbaspirillum seropedicae SmR1

peptide ABC transporter substrate-binding protein
SEED: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
KEGG: peptide/nickel transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -2.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.5 -2.9 compare
carbon source L-Lactate (C) +0.5 +2.9 compare
carbon source D-Glucose-6-Phosphate (C) +0.5 +2.2 compare
carbon source D-Glucose-6-Phosphate (C) +0.5 +2.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +2.1 compare
carbon source D-Lactate (C) +0.6 +1.7 compare
carbon source D-Sorbitol (C) +0.6 +2.4 compare
carbon source D,L-Lactate (C) +0.6 +2.5 compare
carbon source m-Inositol (C) +0.6 +2.3 compare
carbon source succinate (C) +0.6 +1.9 compare
carbon source L-Malic (C) +0.6 +2.6 compare
carbon source L-Rhamnose (C) +0.6 +2.2 compare
carbon source pyruvate (C) +0.6 +3.5 compare
carbon source D-Ribose (C) +0.7 +2.5 compare
carbon source Glycerol (C) +0.7 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +1.1 compare
carbon source D-Galacturonic Acid (C) +0.8 +3.1 compare
carbon source D-Ribose (C) +0.8 +2.7 compare
carbon source L-Asparagine (C) +0.8 +3.7 compare