Fitness data for HSERO_RS15800 in Herbaspirillum seropedicae SmR1

Galactarate dehydratase (EC 4.2.1.42) (from data)
Original annotation: D-galactarate dehydratase
SEED: D-galactarate dehydratase (EC 4.2.1.42)
KEGG: galactarate dehydratase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source D-Galacturonic Acid (C) -4.4 -11.9 compare
carbon source D-Galacturonic Acid (C) -4.0 -10.8 compare
carbon source succinate (C) -0.5 -2.6 compare
carbon source D-Gluconic Acid (C) -0.4 -1.7 compare
carbon source D-Ribose (C) -0.4 -1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.3 -1.3 compare
carbon source D-Ribose (C) -0.3 -1.5 compare
carbon source L-Fucose (C) -0.3 -1.4 compare
carbon source L-Rhamnose (C) -0.3 -1.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 -1.5 compare
supernatant control Vogels_fungal_media 0.1X +0.4 +2.0 compare
stress Fusidic 0.025 mg/ml +0.4 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.8 compare
supernatant control Vogels_fungal_media 0.1X +0.4 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.9 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.4 +1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.4 +2.5 compare
plant Control soil assay; outgrowth in LB +0.5 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +1.8 compare