Fitness data for HSERO_RS15230 in Herbaspirillum seropedicae SmR1

ABC transporter permease
SEED: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
KEGG: branched-chain amino acid transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -2.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.4 -2.2 compare
stress nitrite 20 mM -0.4 -1.9 compare
plant Control soil assay; outgrowth in LB -0.4 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.3 -2.5 compare
vitamin No vitamins t2 -0.3 -1.5 compare
stress Chloride stress -0.3 -2.5 compare
carbon source Glycerol (C) -0.3 -1.5 compare
nitrogen source L-Glutamic (N); low aeration -0.3 -2.2 compare
carbon source D-Xylose (C) -0.3 -1.6 compare
carbon source L-mannose (C) -0.3 -2.0 compare
nutrient L-Serine -0.3 -1.8 compare
carbon source D-Glucose (C) +0.3 +1.5 compare
stress Sisomicin 0.125 mg/ml +0.3 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.8 compare
carbon source a-Ketoglutaric (C) +0.4 +1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +2.0 compare