Fitness data for HSERO_RS15135 in Herbaspirillum seropedicae SmR1

diguanylate cyclase
SEED: diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
KEGG: two-component system, chemotaxis family, response regulator WspR

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -1.0 -3.8 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -1.0 -5.4 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.9 -4.4 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -0.8 -3.2 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.6 -2.8 compare
carbon source D-Ribose (C) -0.6 -1.7 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -0.6 -2.4 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.6 -2.7 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.5 -1.5 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.5 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +0.9 compare
r2a control R2A control +0.6 +2.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +1.7 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.8 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.5 +1.6 compare