Fitness data for HSERO_RS15070 in Herbaspirillum seropedicae SmR1

ribosomal large subunit pseudouridine synthase D
SEED: Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase D

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 3.3)


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group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -4.8 -1.2 compare
plant Control soil assay; outgrowth in LB -4.6 -1.3 compare
r2a control R2A control -4.0 -1.6 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -3.8 -1.4 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -3.6 -1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.6 -1.1 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -3.6 -1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.6 -1.2 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -3.5 -1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.5 -0.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -3.5 -0.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -3.5 -1.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.4 -0.8 compare
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -3.4 -1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.4 -1.0 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -3.4 -1.3 compare
r2a control R2A control -3.4 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -3.4 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -3.4 -1.0 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -3.3 -1.4 compare