Fitness data for HSERO_RS14960 in Herbaspirillum seropedicae SmR1

Fis family transcriptional regulator
SEED: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
KEGG: two-component system, chemotaxis family, response regulator CheY

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -2.2 -5.8 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -2.1 -3.5 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -2.1 -3.0 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.8 -2.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.7 -3.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.7 -3.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.7 -2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.7 -1.7 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -1.6 -4.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -1.6 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.5 -1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.5 -2.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 -2.1 compare
carbon source D-Mannose (C) -1.5 -2.6 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -1.5 -3.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.4 -1.0 compare
carbon source succinate (C) -1.4 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 -2.3 compare
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -1.3 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.4 +1.3 compare