Fitness data for HSERO_RS14830 in Herbaspirillum seropedicae SmR1

RNA polymerase sigma factor RpoS
SEED: RNA polymerase sigma factor RpoS
KEGG: RNA polymerase nonessential primary-like sigma factor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.0 -1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.0 -3.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.8 -3.8 compare
plant Control soil assay; outgrowth in LB -0.8 -3.4 compare
plant Control soil assay; outgrowth in LB -0.8 -3.0 compare
stress Lomefloxacin 0.012 mM -0.7 -2.3 compare
stress Sisomicin 0.125 mg/ml -0.7 -1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -2.3 compare
stress Cobalt chloride 0.2 mM -0.5 -1.2 compare
carbon source L-Fucose (C) -0.4 -2.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.6 compare
nitrogen source nitrate (N); low aeration +0.5 +3.0 compare
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days +0.5 +3.0 compare
carbon source D,L-Lactate (C) +0.5 +3.4 compare
nutrient L-Serine +0.5 +3.5 compare
nutrient L-Histidine +0.5 +3.4 compare
supernatant control Vogels_fungal_media 0.1X +0.5 +2.3 compare
nutrient casaminos +0.6 +2.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +2.7 compare