Fitness data for HSERO_RS14705 in Herbaspirillum seropedicae SmR1

ABC transporter
SEED: Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
stress sodium fluoride 100 mM -1.0 -2.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.9 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -1.5 compare
carbon source m-Inositol (C) -0.8 -1.6 compare
carbon source L-Fucose (C) -0.8 -3.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.8 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -2.2 compare
carbon source D-Galactose (C) -0.7 -2.5 compare
carbon source Glycerol (C) -0.7 -0.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.7 -2.7 compare
carbon source L-Arabinose (C) -0.6 -1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -1.1 compare
carbon source L-mannose (C) -0.6 -2.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.6 -1.2 compare
carbon source D-Galacturonic Acid (C) -0.6 -0.7 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.6 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.8 +1.3 compare