Fitness data for HSERO_RS14150 in Herbaspirillum seropedicae SmR1

RNA polymerase sigma factor
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
stress Lomefloxacin 0.012 mM -2.8 -1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 -1.5 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -1.5 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 -1.2 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -1.2 -1.6 compare
carbon source Glycerol (C) -1.2 -1.5 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -1.2 -1.5 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -1.2 -1.9 compare
stress Cobalt chloride 0.2 mM -1.1 -1.2 compare
agar plate interaction control Taped volatile agar plate with no fungus -1.1 -1.3 compare
carbon source L-Malic (C) -1.1 -1.4 compare
stress Sisomicin 0.125 mg/ml -1.1 -0.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.0 -1.2 compare
carbon source m-Inositol (C) -1.0 -1.4 compare
stress A22 0.04 mg/ml -1.0 -1.4 compare
stress Thallium(I) acetate 0.001 mg/ml -1.0 -1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -1.6 compare
carbon source D-Sorbitol (C) +0.9 +1.4 compare
vitamin With vitamins t1 +1.1 +1.7 compare
carbon source L-Asparagine (C) +1.1 +1.7 compare