Fitness data for HSERO_RS14140 in Herbaspirillum seropedicae SmR1

TonB-dependent receptor
SEED: Ferrichrome-iron receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.6 -3.7 compare
r2a control R2A control -0.5 -3.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -2.1 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.3 -1.8 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.6 compare
carbon source D-Sorbitol (C) -0.3 -1.7 compare
stress nitrite 20 mM -0.3 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -1.7 compare
carbon source L-Glutamine (C) -0.3 -1.8 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.2 -1.2 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.3 +1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.3 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.3 +1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.3 +1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.4 +2.2 compare