Fitness data for HSERO_RS13490 in Herbaspirillum seropedicae SmR1

pseudouridine synthase
SEED: Similar to ribosomal large subunit pseudouridine synthase A

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
carbon source L-Fucose (C) -2.1 -3.4 compare
carbon source D-Ribose (C) -1.9 -3.0 compare
carbon source L-Rhamnose (C) -1.4 -1.9 compare
stress nitrate 200 mM -1.3 -1.7 compare
control NoPredeControl -1.1 -1.8 compare
stress Thallium(I) acetate 0.001 mg/ml -1.1 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.0 -2.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -1.8 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.8 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 -1.1 compare
carbon source L-Fucose (C) -0.8 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +3.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +2.4 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.9 +2.0 compare
agar plate interaction control Taped volatile agar plate with no fungus +1.1 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +2.0 +1.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +3.1 +1.6 compare