Fitness data for HSERO_RS13475 in Herbaspirillum seropedicae SmR1

C4-dicarboxylate ABC transporter
SEED: TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 4

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.8 -2.5 compare
carbon source D-Galacturonic Acid (C) -0.8 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.8 -1.9 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.7 -2.2 compare
carbon source D-Glucose-6-Phosphate (C) +0.7 +2.8 compare
carbon source D-Glucose (C) +0.8 +2.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.8 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 +2.5 compare
stress Chloride stress +0.8 +3.0 compare
carbon source L-Fucose (C) +0.9 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +3.0 compare
carbon source D-Mannose (C) +1.0 +3.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.1 +2.9 compare
carbon source D-Glucose (C) +1.1 +3.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.2 +3.5 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.6 +4.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +2.6 +1.5 compare